So what are we left with? In one corner, we have a group of people who examine the data and believe the advice of the majority of pediatricians and the government. These "support" people conclude that vaccines are much more likely to benefit their children than harm them and are helpful to the long-term health not only of children, but of the population at large. They cite data that show how many infant deaths are prevented every year by immunization and studies that show non-immunized children report more disease events that are categorized as "side effects of vaccine" occurring in immunized children (such as epilepsy; delayed development; communication difficulties).
In the other corner, we have a group of "against" people who believe that vaccines are detrimental to the long-term health of their children, that no studies effectively show that vaccines are safe, and that the full range of serious consequences being caused by vaccines is being minimized and ignored.
The great news is that there is some common ground: Both sides acknowledge that the debate has forced vaccines to become safer, and that's a good thing. Beyond that, your decision may ultimately come down to a) what kind of person you are at heart (trusting of the medical profession or skeptical of it), b) how tolerant you are of risk, and c) what kind of family history of disease you have (whether you're relatively healthy or have genetic dispositions for things like allergies and autism).
I think you are smart enough to digest the arguments and make rational decisions for your children. Most people will follow the official guidelines, which offer the least chance of missing important vaccinations. Others will follow alternative schedules to reduce to the smallest degree possible the potential perceived complications.
Individuals need to customize their own programs with willing physicians as advisors. The one-size-fits-all schedule is dangerous for too many kids.
Find out more about this book:YOU: Having a Baby: The Owner's Manual to a Happy and Healthy Pregnancy